Package: ETRep 0.1.0
Mohsen Taheri
ETRep: Analysis of Elliptical Tubes Under the Relative Curvature Condition
Analysis of elliptical tubes with applications in biological modeling. The package is based on the references: Taheri, M., Pizer, S. M., & Schulz, J. (2024) "The Mean Shape under the Relative Curvature Condition." arXiv <doi:10.48550/arXiv.2404.01043>. Mohsen Taheri Shalmani (2024) "Shape Statistics via Skeletal Structures", PhD Thesis, University of Stavanger, Norway <doi:10.13140/RG.2.2.34500.23685>. Key features include constructing discrete elliptical tubes, calculating transformations, validating structures under the Relative Curvature Condition, computing means, and generating simulations. Supports intrinsic and non-intrinsic mean calculations and transformations, size estimation, plotting, and random sample generation based on a reference tube.
Authors:
ETRep_0.1.0.tar.gz
ETRep_0.1.0.zip(r-4.5)ETRep_0.1.0.zip(r-4.4)ETRep_0.1.0.zip(r-4.3)
ETRep_0.1.0.tgz(r-4.4-any)ETRep_0.1.0.tgz(r-4.3-any)
ETRep_0.1.0.tar.gz(r-4.5-noble)ETRep_0.1.0.tar.gz(r-4.4-noble)
ETRep_0.1.0.tgz(r-4.4-emscripten)ETRep_0.1.0.tgz(r-4.3-emscripten)
ETRep.pdf |ETRep.html✨
ETRep/json (API)
| # Install 'ETRep' in R: |
| install.packages('ETRep', repos = c('https://mohsentaherishalmani.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mohsentaherishalmani/elliptical_tubes/issues
- colon3D - Data
- simulatedColons - Data
- tube_A - Data
- tube_B - Data
Last updated 15 days agofrom:7f0275c2d0. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 08 2024 |
| R-4.5-win | WARNING | Nov 08 2024 |
| R-4.5-linux | WARNING | Nov 08 2024 |
| R-4.4-win | WARNING | Nov 08 2024 |
| R-4.4-mac | WARNING | Nov 08 2024 |
| R-4.3-win | WARNING | Nov 08 2024 |
| R-4.3-mac | WARNING | Nov 08 2024 |
Exports:check_Tube_Legalitycreate_Elliptical_Tubeintrinsic_Distance_Between2tubesintrinsic_mean_tubeintrinsic_Transformation_Elliptical_TubesnonIntrinsic_Distance_Between2tubesnonIntrinsic_mean_tubenonIntrinsic_Transformation_Elliptical_Tubesplot_Elliptical_Tubesimulate_etube
Dependencies:abindbackportsbase64encbezierbootbroombslibcachemcarcarDataclassclassIntclicodetoolscolorRampscolorspacecowplotcpp11cubatureDBIDerivdigestdoBydoParalleldotCall64dplyre1071evaluatefansifarverfastmapfieldsfontawesomeforeachFormulafsgenericsgeometryggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetsisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelifecyclelinproglme4lpSolvemagicmagrittrmapsMASSmatlibMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminpack.lmminqamisc3dmodelrMorphomunsellmvmeshnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpracmaproxyptinpolypurrrquantregR6rappdirsrbibutilsrcddRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressRdpackreshape2rglRiemBaserlangrmarkdownrotationsRSpincalcrstudioapiRvcgs2sassscalesscatterplot3dsfshapesSimplicialCubaturespamSparseMSphericalCubaturestringistringrsurvivaltibbletidyrtidyselecttinytextruncnormunitsutf8vctrsviridisLitewithrwkxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check the Legality of an Elliptical Tube (ETRep) | check_Tube_Legality |
| Data | colon3D |
| Create a Discrete Elliptical Tube (ETRep) | create_Elliptical_Tube |
| Calculating the intrinsic distance between two ETReps | intrinsic_Distance_Between2tubes |
| Calculate Intrinsic Mean of ETReps | intrinsic_mean_tube |
| Intrinsic Transformation Between Two ETReps | intrinsic_Transformation_Elliptical_Tubes |
| Calculating the non-intrinsic distance between two ETReps | nonIntrinsic_Distance_Between2tubes |
| Calculate Non-Intrinsic Mean of ETReps | nonIntrinsic_mean_tube |
| Non-intrinsic Transformation Between Two ETReps | nonIntrinsic_Transformation_Elliptical_Tubes |
| Plot an Elliptical Tube (ETRep) | plot_Elliptical_Tube |
| Simulate Random Elliptical Tubes (ETReps) | simulate_etube |
| Data | simulatedColons |
| Data | tube_A |
| Data | tube_B |