Package: ETRep 1.1.0

Mohsen Taheri Shalmani

ETRep: Analysis of Elliptical Tubes Under the Relative Curvature Condition

Analysis of elliptical tubes with applications in biological modeling. The package is based on the references: Taheri, M., Pizer, S. M., & Schulz, J. (2024) "The Mean Shape under the Relative Curvature Condition." arXiv <doi:10.48550/arXiv.2404.01043>. Mohsen Taheri Shalmani (2024) "Shape Statistics via Skeletal Structures", PhD Thesis, University of Stavanger, Norway <doi:10.13140/RG.2.2.34500.23685>. Key features include constructing discrete elliptical tubes, calculating transformations, validating structures under the Relative Curvature Condition (RCC), computing means, and generating simulations. Supports intrinsic and non-intrinsic mean calculations and transformations, size estimation, plotting, and random sample generation based on a reference tube. The intrinsic approach relies on the interior path of the original non-convex space, incorporating the RCC, while the non-intrinsic approach uses a basic robotic arm transformation that disregards the RCC.

Authors:Mohsen Taheri Shalmani [aut, cre], Jörn Schulz [aut], Stephen M. Pizer [aut]

ETRep_1.1.0.tar.gz
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ETRep.pdf |ETRep.html
ETRep/json (API)
NEWS

# Install 'ETRep' in R:
install.packages('ETRep', repos = c('https://mohsentaherishalmani.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mohsentaherishalmani/elliptical_tubes/issues

Datasets:

On CRAN:

Conda:

3.54 score 3 scripts 199 downloads 11 exports 135 dependencies

Last updated 3 months agofrom:475665fc95. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 03 2025
R-4.5-winOKMar 03 2025
R-4.5-macOKMar 03 2025
R-4.5-linuxOKMar 03 2025
R-4.4-winOKMar 03 2025
R-4.4-macOKMar 03 2025
R-4.3-winOKMar 03 2025
R-4.3-macOKMar 03 2025

Exports:check_Tube_Legalitycreate_Elliptical_Tubeelliptical_Tube_Euclideanizationintrinsic_Distance_Between2tubesintrinsic_mean_tubeintrinsic_Transformation_Elliptical_TubesnonIntrinsic_Distance_Between2tubesnonIntrinsic_mean_tubenonIntrinsic_Transformation_Elliptical_Tubesplot_Elliptical_Tubesimulate_etube

Dependencies:abindbackportsbase64encbezierbootbroombslibcachemcarcarDataclassclassIntclicodetoolscolorRampscolorspacecowplotcpp11cubatureDBIDerivdigestdoBydoParalleldotCall64dplyre1071evaluatefansifarverfastmapfieldsfontawesomeforeachFormulafsgenericsgeometryggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetsisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelifecyclelinproglme4lpSolvemagicmagrittrmapsMASSmatlibMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminpack.lmminqamisc3dmodelrMorphomunsellmvmeshnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpracmaproxyptinpolypurrrquantregR6rappdirsrbibutilsrcddRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressRdpackreformulasreshape2rglRiemBaserlangrmarkdownrotationsRSpincalcrstudioapiRvcgs2sassscalesscatterplot3dsfshapesSimplicialCubaturespamSparseMSphericalCubaturestringistringrsurvivaltibbletidyrtidyselecttinytextruncnormunitsutf8vctrsviridisLitewithrwkxfunxtableyaml